rs50840221 SNP Detail

Summary

• ID
  rs50840221
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147897399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC ATACATAGAT ACATCTTAAC
  S
  TCTCTCCTGC TCCGTTCTCA TCTAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147983139	ENSMUSSNP5781180	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50840221					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147897399 () rs orientation: forward

Symbol	Name	Function Class
Rr367778	regulatory region 367778	378 bp upstream
Rr398847	regulatory region 398847	1084 bp downstream
Rr398848	regulatory region 398848	1563 bp upstream
Rr604504	regulatory region 604504	1662 bp proximal
Rr604505	regulatory region 604505	1808 bp proximal
Tssr44549	transcription start site region 44549	1729 bp downstream