rs50840069 SNP Detail

Summary

• ID
  rs50840069
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19718590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACAAGCC ATCATGCCTG GCAATTCTCA ATGCCTTACT
  TATATATTTC TGTGTTTCCC ACTATTGCCG AGTGAGTCTG AAATTTTTAA TAGCTCGTAA
  S
  AACTAGTTGT AAATGAGCAG ATGTGTGGCT ATGCATGTGT TTCATGTGGA GATGATGTAG
  GGGTCATTAA CTGTGATTCC TATGCTCTGT TTCAAAAGGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss60376646	NES15883810	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs50840069					SNP	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376646	NES15883810	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19718590 () rs orientation: forward

Symbol	Name	Function Class
Rr574018	regulatory region 574018	745 bp distal
Rr574019	regulatory region 574019	16 bp proximal
Trim55	tripartite motif-containing 55	Intron