rs50839775 SNP Detail

Summary

• ID
  rs50839775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149955954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT GTCAGAGTGC TTCCCCAGTG
  R
  GTAATCCCAG TATTTGGGAG GTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148042126	ENSMUSSNP997047	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss321427068	CHEV_4_149245606	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50839775					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149955954 () rs orientation: forward

Symbol	Name	Function Class
Rr605088	regulatory region 605088	1160 bp distal
Rr605089	regulatory region 605089	864 bp distal
Rr605090	regulatory region 605090	within coordinates