rs50837666 SNP Detail

Summary

• ID
  rs50837666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106645583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATCTCAT CTCTCATGAC ATGTAAAAAC AAGACAAGGC
  CATTTAAAGA AGGAAAGAAA ACACAGAGCA TCGAGGGGTG TGGCCCGGTG GGTGGCATGC
  Y
  TGCCTAATAT CCAGAAAGCC CTGGGTTTGA TCCCCACCAC TGCATGAAAC GGTTGTGGTA
  TTATCCCAAC ATTTGGAAGA TGGAGACAGG AGGATCAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147171872	ENSMUSSNP3491990	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321247240	CHEV_4_106460991	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50837666					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106645583 () rs orientation: forward

Symbol	Name	Function Class
Acot11	acyl-CoA thioesterase 11	Intron
Rr596808	regulatory region 596808	1561 bp distal
Rr596809	regulatory region 596809	122 bp distal
Rr596810	regulatory region 596810	812 bp distal
Rr596811	regulatory region 596811	1317 bp proximal