rs50836754 SNP Detail

Summary

• ID
  rs50836754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19373639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTAGG GTGGCTATCA
  GATATTTTAA AGTCTAATTA TCTATACAAC AGGAAATAAC AGATGTTGAT AAGGATGTGA
  AAGTACCAGA AACCTTTGAC CCTGCTGGAA GACATGTAAA ATGGTTTTGC TGCAATGGAT
  AACAGTTTAA TGGTTTTTCA AAATATTACA GATCACATAT GATGAAGTAA TTCCACTCTG
  Y
  AACCCCCAAA GATACAGAAA CAAGCATTTT CAGATACTTG TTTGCCATTG TTCACAGATC
  TCAGAAAGTG GATACAATCC AAACATTATC AGCAGATGAA TGAATGTAGC CAAATGTTGC
  CTCTATGTAC AATGGAATAT TATTCAGCCT TAGAAATTCT GATGTATCCT ATACAGTAGA
  TGATCCAATA GGGACATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss134666663	ENSMUSSNP5364298	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320678415	CHEV_3_19219475	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50836754					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19373639 () rs orientation: forward

Symbol	Name	Function Class
Rr573974	regulatory region 573974	within coordinates