rs50836615 SNP Detail

Summary

• ID
  rs50836615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126453980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAGCTG CTGGGTCAGT
  TCCACAGTTT ACACTGTGTG TAAAATCTAG CTGCCTCAGC CCTCCAATCT CATGTCCACT
  GGCAGTTTCA TGTGTCCCCT TTCTGCAATA GAACGTCCTG GCTGTTTATC ACAGAGTTAC
  CTCAACTCTT TTTGGCTCAC CTTCGAGGTT GTGGTCCACA GACAAACATT TCGTACTCTT
  Y
  ACTGTTCTCC AAGCCCTCTG AGTAGGTTTC TTCCTGATTA TGAGTCATGC TGTGCTTGCT
  CTTTGTCACA ATCTCACTTC GTCCCCTTCA AAGTGGAAAA ACCTCTACAC ACTCACAAGG
  CCATGCTCTA CTCCCTCACC TCGTCCTTGC TTTTGTTTTT TCTGTCTTGT CCCCACAGTG
  GTAAGCATAT CCCTGTGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135838242	ENSMUSSNP4065552	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320947057	CHEV_3_126363249	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50836615					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126453980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43006	predicted gene 43006			1008 bp downstream
Rr397996	regulatory region 397996			1583 bp upstream
Rr584670	regulatory region 584670			1184 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1531 bp proximal