rs50834570 SNP Detail

Summary

• ID
  rs50834570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19720008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCAGTC ATAATCGCTT
  TAGAATGTCT CTGCCATGCC TATGGCACAT GCCTAAACTG GGTCTCATGT TTATGTCTTG
  CTTCTGTTGG TGACACTCTA AAACTGGCTG GGAATGGAGA GAGGAATGTT GTAGCCTAAA
  GAACATCAAA AATATCTCCA CATTTCTGAG TTACAGGGTC TTGGAACTGT AGATTCAGAG
  R
  GACAGTATCA ATTATCCAAT CTGACCTGTC AACCACATAC ACAGCATCTT TTAAACAATT
  GTCGTGAGGT TAAGTGGTTC CCATAACTTT GGTGTTTTGA GGAGCATGTA TGGTTCACTA
  ATGGGTAAGA CTGCTGATGG CTTTTCTCCT CCAACAGGGA GCGGCTTCCA GTTCGGTTCC
  ACATTGATCA TGTCCTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60376632	NES15883837	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		A	A	A	A		G
ss320679394	CHEV_3_19565844	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50834570					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376632	NES15883837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19720008 () rs orientation: forward

Symbol	Name	Function Class
Rr574019	regulatory region 574019	within coordinates
Trim55	tripartite motif-containing 55	Intron