rs50828216 SNP Detail

Summary

• ID
  rs50828216
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:131371416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTAGGAC CTGGCTGCTC TTTTTTGTCA GGGTTCTAAT
  CAGATACTTT TCTGGGCATA CTGTCCTTTT CCACAGTTAC CCCGTCTACC CCATTCTGTG
  S
  CCCCTTTCTT CACGGCCTTT CTTTCCTCCC CTTTGCTACT TGGTGTTTAT GCAGATGCCT
  GTCCTTCCAT CTCATGACTA TGGAAGTTCC CTGTTCACT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147606985	ENSMUSSNP4250923	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50828216					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131371416 () rs orientation: forward

Symbol	Name	Function Class
Gm30732	predicted gene, 30732	Intron
Rr565285	regulatory region 565285	437 bp proximal
Rr565286	regulatory region 565286	709 bp proximal
Rr565287	regulatory region 565287	1149 bp proximal