rs50827060 SNP Detail

Summary

• ID
  rs50827060
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGAAGTC AGCGCTTCCC
  TCCTCCTGCC AACTCCACGT TTCCGCCAGC AGGAGGCACC AGCGAAGCGC CAGCGCGGGG
  TTCGCACGGG AACCTCTACA AGGACTTGTT CGTTTGCTGC AGCAAGGAAG TCAGAGAGCC
  CAAGCTCTGG AGCGACAGCC CTGGACTGCA CCTCATTCTC CGCCTCTGTC CTTTAATGCT
  S
  GTGAGACTGG GTAGTCTGCT TGACCCCTCT GAGTCTCACA TTCCCCGTGT GGGAAGTGAG
  GCTGGCCCTG AGAGGGATAT TTGCTCCAAA TTTAGAGGTT GAGGCAGACA GTCTTCTGGC
  ACAAGAGTCT GCTCAGTTCA GATTCACCAC AGCCCAACAG TGAGGCCAGG CTCCTCCAGC
  CAGGTGCCTG GTTTCTCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557395	ENSMUSSNP5544102	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50827060					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15093	CpG island 15093	within coordinates
Cpgi15094	CpG island 15094	996 bp proximal
Rr367750	regulatory region 367750	1214 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	138 bp distal
Rr602259	regulatory region 602259	482 bp proximal
Rr602260	regulatory region 602260	1416 bp proximal