rs50825700 SNP Detail

Summary

• ID
  rs50825700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108729914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGTGTACT GGCTGCGTCC AACTCCTTTG GGTGTCTTTC
  TCATCTCATG CTCAGATATC ATATTTGCAT GCATGCATTT GTTCTTATTC ATGTATTTAT
  K
  TATCTACTTG TTTGCTTGTC TGTTTATTGT GAACTTGTGT GTAGTTTAGA GTTGTTGGAG
  TCCGTTCTCT CATCCTCCCA TGGGGCTCTC AAGTCTTAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133508776	ENSMUSSNP1747718	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss321893990	CHEV_6_108702947	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50825700					SNP	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108729914 () rs orientation: forward

Symbol	Name	Function Class
Rr636193	regulatory region 636193	215 bp distal
Rr636194	regulatory region 636194	952 bp proximal