rs50821687 SNP Detail

Summary

• ID
  rs50821687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCTGGG AGGAAAATTA
  CCTCCTGACT GAGAATTAAC AGGCCAACCC ATCTGGTCTG AGGTGCCGAG GAAGTCGGGG
  CATCCTACAG GAAACCTACA AGCTAGGTTC GCTTCTCATC TCCCCCAGCT CCTTAAGCTC
  CACCTTTTTG TATTTGCCCG ACTTCCTCCG TTTGGTGACC ACCAAGACCA CCACACCAGC
  Y
  ACTACCGCTA CCGAGACGAC AGCGATGACG GCAATGACGC CGGCGGTGAG GCGCTTCATG
  GAGAACTGGG GGGGCTTCTC GTCCAGGTAG TAGATGAGCG TCCGCTCCAC ATGCAGGGGT
  TCCCCACGCA CCTGCACGTC CAGGCCGCGG CGGCCCATGA ACAGTGACTC GCCTTTAATG
  TCCCTTTCGA AGTAGTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894265	NES15959596	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50821687					SNP	C	C	C	C	C	C	T	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894265	NES15959596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	1450 bp distal
Cpgi17512	CpG island 17512	within coordinates
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1552 bp upstream
Rr368087	regulatory region 368087	1485 bp downstream
Rr631666	regulatory region 631666	1563 bp distal
Rr631667	regulatory region 631667	1062 bp distal
Rr631668	regulatory region 631668	46 bp distal
Rr631669	regulatory region 631669	376 bp proximal
Rr631670	regulatory region 631670	927 bp proximal
Rr631671	regulatory region 631671	928 bp proximal
Rr631672	regulatory region 631672	1100 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	Coding-Synonymous
Tssr1869	transcription start site region 1869	1520 bp upstream
Tssr1870	transcription start site region 1870	1389 bp downstream
Tssr1871	transcription start site region 1871	1040 bp downstream
Tssr1872	transcription start site region 1872	77 bp upstream
Tssr61254	transcription start site region 61254	1195 bp upstream
Tssr61255	transcription start site region 61255	113 bp upstream
Tssr61256	transcription start site region 61256	336 bp downstream
Tssr61257	transcription start site region 61257	827 bp downstream
Tssr61258	transcription start site region 61258	925 bp downstream
Tssr61259	transcription start site region 61259	970 bp downstream