rs50819679 SNP Detail

Summary

• ID
  rs50819679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:99123046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTGCAG CCCTCCAACA
  TGACAGTTTC AATTCAGCCA TCTGTTTACA GATATTTGGT TCATTTCTTA CTTTTGGCTA
  TATGGATAAA ACTGCTATGA ATTTATAAAC AATGAAGAAT CACTAATACA AAAGGCTTAA
  CTCAGTCTCA CAGAGATGGC TGGCTAGCAT ATGTTCTAGA TTAGACTATA CGTGCTGACT
  Y
  TGGTGGTCTG TGTTTCTTCT TTCCTTCAAG TATTAGAAAT GTATCCCATA CTTGATGAAC
  TGGCTTTGCT TTGCTGAACA GCGCAGTCTC ATGAGGGTGA AGGTTTGGTT AAATATACAC
  AATGCTGGTT CTTGTGTTGT GCATCTTTAT AGAGAATAGG GAGGGCTAAA ATGCTCCTTA
  GAAAATGTTT ATTATATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147098682	ENSMUSSNP2671412	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50819679					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99123046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg4c	autophagy related 4C, cysteine peptidase			Intron
				Noncoding-Transcript-Variant
Rr595849	regulatory region 595849			290 bp distal
Rr595850	regulatory region 595850			484 bp proximal
Rr595851	regulatory region 595851			578 bp proximal