rs50819408 SNP Detail

Summary

• ID
  rs50819408
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38540402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTA TTATTACTTT GTTAATGAAA
  T
  GTTCTTAAAT CTTAAGAGTT GCATA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134837241	ENSMUSSNP615570	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320719973	CHEV_3_38385175	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50819408					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38540402 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	1409 bp upstream
Cpgi13104	CpG island 13104	847 bp distal
Gm65619	predicted gene, 65619	770 bp downstream
Rr397648	regulatory region 397648	1203 bp downstream
Rr575676	regulatory region 575676	1138 bp distal
Rr575677	regulatory region 575677	418 bp distal
Tssr28929	transcription start site region 28929	1042 bp downstream
Tssr33057	transcription start site region 33057	1462 bp upstream
Tssr33058	transcription start site region 33058	1431 bp upstream
Tssr33059	transcription start site region 33059	1389 bp upstream