rs50810712 SNP Detail

Summary

• ID
  rs50810712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:88039170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCACAGA GCTCTGCCTG
  CCTCTGCCTC CCAAGAGCTG GGATTAAAGC CGTGCACCAC CACGCCTGGC CTGATATGAG
  CATCTTATGA TCTAATAAAC AACTATTGCA GAAAATGAAG ATGGTGATGA TCACCAGCTG
  TTTCAAAAAC CCAAAGGATG GGGTTAGGCA GCTCCTGGGG CTGACTGTGC AGAAGCCCCC
  R
  GGGCGAGGGT TGCACACCTG CTAGGATGTA TGAGCCTAGA GTGAAGAAGC TCTGAGCCTC
  TCTCCACACT ACACCCCATG CTCTCTAATG GTATTCTCCA TGCATGCTCT ACTATAACTG
  ATGGGCGTCA ACAAGTGCTT CCCTGGGTTT TGTGAGGTTT CTTCTTCAAG TTTAATGGTT
  TTAGTTCTTT TTAGGGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133364819	ENSMUSSNP1654093	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50810712					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88039170 () rs orientation: forward

Symbol	Name	Function Class
Rr633809	regulatory region 633809	550 bp distal
Rr633810	regulatory region 633810	266 bp proximal
Tssr1927	transcription start site region 1927	1315 bp downstream
Tssr57564	transcription start site region 57564	1299 bp downstream
Tssr57565	transcription start site region 57565	1258 bp downstream