rs50806907 SNP Detail

Summary

• ID
  rs50806907
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36517364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTATATCAGC TAGATTGAGG CTACCCAGTG GTTTGTAGAA
  GGAAAAAAAA AATACAGATA GGCAAAGAAA TAAAATTCTA ATAAATGAAT CTAACCTGTG
  R
  AAAAAAAAGT GGTTCTGTTA CCTGAAGGTT TTCAGATGTT ATTATTTCTG AAACAAACTA
  ACAGATATGT AATCATTTTC TTCTTTGGTG TCATATGCTC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60878023	NES15972381	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	A		G	G	A	G
ss133119271	ENSMUSSNP7236863	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50806907					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60878023	NES15972381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36517364 () rs orientation: forward

Symbol	Name	Function Class
Gm53280	predicted gene, 53280	within coordinates
Rr628547	regulatory region 628547	844 bp proximal