rs50805560 SNP Detail

Summary

• ID
  rs50805560
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141234068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCCCAC TGCACCCAGC
  AACGCCACAA ACAAGGCAAA GGCTGGCAAA ACAAGGAAGC TTTCAGGAGG TGGCAAACAG
  CCAACTCAAA CCGGATAATT CCAGTTCAGG CTGGTTCAAG ATACAAACAC AGTTCCTAGC
  TTCTCAAACA AAACTCAGCC ACGGGCTCCA GGTTCTTTTC TCCAGGGGCA GAGCAAACCC
  S
  AGTAAGCTCA GCATCTAAGC CCCAAACTGA AGACCTATTC TTCTGGCCAG AAAACCACCA
  AAAGACAGAC AGACAGACAG ACAGACAGAC AGACAGTCAG ACAGATGCAC ACACACATAC
  ACAAACACTT CTTTTAAGCG TTACTAAAAT TCTAGATTTG ACATCGTTTC TGGGAAACCA
  GCTAGGAATG CACCTGCCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147739698	ENSMUSSNP3487005	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
ss321387740	CHEV_4_141062672	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50805560					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141234068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			1960 bp distal
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			353 bp proximal
Rr603783	regulatory region 603783			626 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant