rs50805078 SNP Detail

Summary

• ID
  rs50805078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150355699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC ACATACTGGG ATTAAAATCA
  Y
  GCACCATCAT GCCCAGTCCA AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148051606	ENSMUSSNP3001747	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321428890	CHEV_4_149645351	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50805078					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150355699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15349	CpG island 15349	1941 bp distal
Rr377418	regulatory region 377418	1941 bp downstream
Rr605261	regulatory region 605261	907 bp distal
Rr605262	regulatory region 605262	1127 bp proximal