rs50804404 SNP Detail

Summary

• ID
  rs50804404
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118947280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTGTGTG GGGGGGGGGG TGGTGGTGGT AAAATGAAGG
  CCGAAGAGGG TTCAGGAACT TTGGCATCAT GCTAAGAAGT AATAGTGGTG TCAGGAAGGA
  T
  TCGGGAGTTG GGAGACACAA GGCAATGTGG AAGTGAAGCA CCTTGGCAGG CTCCTTAACC
  AAATTTTACA GGACTTATAG CCCATGTGCC CTGAATGGA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133585791	ENSMUSSNP2653208	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321926469	CHEV_6_118920337	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50804404					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118947280 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637559	regulatory region 637559			1503 bp proximal
Tssr62671	transcription start site region 62671			1959 bp upstream