rs50804349 SNP Detail

Summary

• ID
  rs50804349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56879129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGACT AAGCCTTATG
  CAAACAGCCC CGTGACGCAC GCGGAACAGT GCTTTATTAT GCTATGGGTG GCAGCCTTGC
  TGGCTCTCTC AGCTTGATAC CATTCAGTTT ACAGAATTTA ACCAGCTGGG AAAACATGCC
  TGCTGAGGGC AGGTAGCTCA GCCAAGCAAC CACTCTGCAA TCTAAGAAGG AACTCTGAGC
  R
  TAACTTTTAG ACCACTCCTT TCCTGTTGCT GACGGACTGT GCTGCACTTG TGATATGTGC
  AGTCCTCTGG TGGATGCTCT ACTTCAAGAC AAAATGAAAA GATGAAGTTT GGTTGCTGGA
  GCCGGGAGAG GCAGATAGGA GGCTGTTGTT GCTCAATTGG GCAGAGTTCC AATTTTTAAA
  TAAAAACTGT CCTATGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60887170	NES15966047	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50804349					SNP	A	G	G	G	G	G	G	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60887170	NES15966047	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56879129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			within coordinates
Rr631115	regulatory region 631115			511 bp distal
Rr631116	regulatory region 631116			within coordinates
Rr631117	regulatory region 631117			923 bp proximal
Rr631118	regulatory region 631118			1007 bp proximal
Rr631119	regulatory region 631119			1233 bp proximal
Rr631120	regulatory region 631120			1545 bp proximal
Tssr1860	transcription start site region 1860			within coordinates
Tssr61149	transcription start site region 61149			306 bp upstream
Tssr61150	transcription start site region 61150			253 bp upstream
Tssr61151	transcription start site region 61151			225 bp upstream