rs50803967 SNP Detail

Summary

• ID
  rs50803967
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32035531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTAGC TTCATGGTTG
  GCAAATTAGA AGAATTAGAA GAAGAAGATT ACACTCAAAG ATCTTCTCTT TAAATCTTCT
  CCTCTAGTTC AAGATCTGGA GTCACTCTAG AGGAGCGGTG AGTAAGAGAA AGCAAAGAGT
  CTGCAGAAAC AAGCCTGCTG CAGAAGAGGG CGCAGAGAGA AGCCTGCTGC AGAAGTGGCT
  K
  CAGAGAGATG CCTGCTGCAG AGAGAAGCCT CCTGGCCAGA GAAGCCTGCT GGAGAAGTGG
  CTGCAGAGAG ATGCCTGCTG CAGAAATGAC TGCAGAGAGG AGAAGGTTGC TGTAAAAGCC
  ACTGTAGAGA CAAGTGTAGC ACCTTATCAG GGCCAAGAAG CCACCTTCTC ACCTGACCCT
  TGAACATTCT ACTCTCCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133098277	ENSMUSSNP3310551	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50803967					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32035531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700012A03Rik	RIKEN cDNA 1700012A03 gene			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm67015	predicted gene, 67015			525 bp upstream
Rr628076	regulatory region 628076			1589 bp distal