rs50800679 SNP Detail

Summary

• ID
  rs50800679
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129940984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AACTCCATCA ATTGTTCTCT GGCGTCCACA CATACAACAT
  GGCATTTACA ACTATGCCTG TGTACACGTT CCGCACATAC ACATACAAAA TAAATTAATT
  A
  AAAAAAAAGT CTTCTTAAAG CAGGGAGCAG GGAGGGGGCA GGGGGTAGGG ATCTGAGTCT
  TTCCAACCTT CTGGAGTCCA AGAGGACTCC CTGACCCTAC T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147458176	ENSMUSSNP4683094	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50800679					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129940984 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	654 bp upstream
Cpgi14918	CpG island 14918	1194 bp distal
Cpgi14919	CpG island 14919	132 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600419	regulatory region 600419	1076 bp distal
Rr600420	regulatory region 600420	1530 bp distal
Rr600421	regulatory region 600421	within coordinates
Rr600422	regulatory region 600422	558 bp proximal
Rr600423	regulatory region 600423	660 bp proximal
Tssr1308	transcription start site region 1308	355 bp upstream
Tssr39217	transcription start site region 39217	169 bp upstream
Tssr39218	transcription start site region 39218	665 bp upstream
Tssr39219	transcription start site region 39219	723 bp upstream