rs50799770 SNP Detail

Summary

• ID
  rs50799770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90959309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTATCAA AGATACCACC
  CTTCACTAAA AGTGTCTCTG TATTTGCTGC AGGATAAGAG CTGCTTACAG GGCAAAGAGA
  TTAGATGTGG ATGCAGAGGC AATTCTGTTA TGATCACCTA GCTATATACA CCAAGCCCTT
  GTTTGTTGAA CTAATGATTG GAAGAAACTA CTCCACCATG AATACTGTCC CTTCCTTCAG
  Y
  AGGGCAAATT AGAATTTTGT GTGGAATTTG TTGCTAAACT ACAGGAAAAT CCACAGAAAA
  CTATACTACA GAATGACATA TCCTCAGGGA TATGATTGCA TAGATTATGG CTTTTAATAA
  TGGCAGTTCA TAATGTCAGA GGGTTATAGC CCACTAGGAA ATACATGAGA TATTTGGAAG
  ATTATATCAT ACCTGCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423757	NES15929009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50799770					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423757	NES15929009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90959309 () rs orientation: forward

Symbol	Name	Function Class
Rr580440	regulatory region 580440	1096 bp proximal