rs50794841 SNP Detail

Summary

• ID
  rs50794841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42028969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTGTGT AATTGTGACT
  CTAATGGCAA GTTCAGCCTT TTACCTGTTG TGCTTTTTTT ATTAAATTGT GCTGGAAATA
  ATGCACACAA AAATCCAGAG CAGATTGAAA AATTTTAGTT CCGGGGTACT ATTTTAAAGC
  TTAATAAGAA AATTTTAACC ATTTCAATAT ATTATTAGAA TAAGATTCAA ATGAATTTCA
  R
  AAAATTCATC CTATTGGAAA CAAGCTTCAA GTGCACGATT TCCAATAAAG TGGGAATAAA
  CATTTTTCCT TTACCTGACT GTTGGACGAA CCAAGACTCA AGTATGGGTG GCCAGCAGAT
  GGCAGTATAA CCCCACTTTT TTTAATTCCA TGGCCGCACA TGGATCTGAA AATACAGGCT
  TTTTTTTTTT TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135047788	ENSMUSSNP5610358	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320730609	CHEV_3_41878456	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50794841					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42028969 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	23 bp proximal
Rr576015	regulatory region 576015	108 bp proximal