rs50790482 SNP Detail

Summary

• ID
  rs50790482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41359452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT GTATGTAAAA AGACAAGGGA
  R
  TTTGAATGTC AAATGTTCAG ATTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60600967	NES16305576	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G		A	G	G	A		A
ss144675320	ENSMUSSNP1528999	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322633620	CHEV_8_41991769	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50790482					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600967	NES16305576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41359452 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77022	transcription start site region 77022	1879 bp downstream
Tssr77023	transcription start site region 77023	795 bp downstream
Tssr77024	transcription start site region 77024	591 bp downstream
Tssr77025	transcription start site region 77025	544 bp downstream
Tssr77026	transcription start site region 77026	134 bp downstream
Tssr77027	transcription start site region 77027	192 bp upstream
Tssr77028	transcription start site region 77028	290 bp upstream
Tssr77029	transcription start site region 77029	458 bp upstream
Tssr77030	transcription start site region 77030	1485 bp upstream
Tssr77031	transcription start site region 77031	1631 bp upstream
Tssr77032	transcription start site region 77032	1990 bp upstream
Tssr81070	transcription start site region 81070	1918 bp upstream