rs50789735 SNP Detail

Summary

• ID
  rs50789735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127684073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATCTCA GTTAAGAGGT
  GGACAGCACT ACACCTATTA CAAATGAGGA AACTGGTCAT CAGGCTCAGG TTGATCAAGC
  AGTAATGCCA GGCTTTAAAT TTAGAATGAC CACACTATAA GTCCTGTGCT GCTTCTTAAA
  AATGTCAACA AAGAAGACAT GGGAAAAGGA GAATGTGGTA CAGGTGAGTG GAAAGGAATG
  R
  AAGTGCCATG GGAGAATGAG CCCAACAGGA AAAATGTAGA AAAGAATGTG GAGGAGAGAA
  AAGGCAAGTT AGCGGAAAGA GACACAGAGA TCAGGGATTA CCAATTGGGA TTATCTGATG
  GAAATATATA TACTCTTCAA GACAAGAAAT AAACTATTTT CACCTCTTCT GAGGGGGTGG
  GGGTGGGGGG GACACAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135874310	ENSMUSSNP457077	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320957933	CHEV_3_127593342	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50789735					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127684073 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	500 bp distal
Rr584893	regulatory region 584893	103 bp distal
Rr584894	regulatory region 584894	372 bp proximal