rs50789256 SNP Detail

Summary

• ID
  rs50789256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCCAGCT GATGGCTGAA TAGCCCCCAC CACAAGGGAA
  GGAGAGGCTG GAGGACTCTA GAGCCCAGCA GTTTAAAGCC AACCTGGGCA ACAGTGAGAC
  Y
  TTGTCCAAAA ATGAGGGGGT CAGGGCTCAG TGTTATAGCA TCTGTTTACC AGCATCTGTT
  TACAGTACCA GCATAGCCTA GGTAAAGTTC CAAATGATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147992012	ENSMUSSNP3895628	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321416976	CHEV_4_147463167	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50789256					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173515 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	1027 bp upstream
Cpgi15288	CpG island 15288	507 bp distal
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	1038 bp distal
Rr604584	regulatory region 604584	537 bp distal
Tssr44579	transcription start site region 44579	1031 bp upstream
Tssr44580	transcription start site region 44580	1002 bp upstream
Tssr44581	transcription start site region 44581	989 bp upstream
Tssr44582	transcription start site region 44582	123 bp downstream
Tssr44583	transcription start site region 44583	151 bp downstream