rs50788908 SNP Detail

Summary

• ID
  rs50788908
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119670044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ACACCACAGT GGCAGACACT CCTGCCTCCT TTGCACCCCC
  CCCCTCCCCA GGTCTGGGTA GAAGAGAGGC TTTGAGAAGA GTGACAGGCT CCCTGTGGTA
  S
  GTCTGTGCCT TGTCACCAAG CCTCCTAAGC TCAGGTCTGT GGTAGCCACA GGAGAGCTAG
  CTCCATGCTG TGTGGCTGGT GACATTTCCG GCTGCCAGTG C                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147336387	ENSMUSSNP5849565	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50788908					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119670044 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14707	CpG island 14707			1944 bp proximal
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			within coordinates
Rr398436	regulatory region 398436			553 bp upstream
Rr598655	regulatory region 598655			within coordinates
Rr598656	regulatory region 598656			1158 bp proximal
Rr598657	regulatory region 598657			1659 bp proximal
Tssr38753	transcription start site region 38753			209 bp upstream
Tssr38754	transcription start site region 38754			1460 bp upstream
Tssr38755	transcription start site region 38755			1528 bp upstream
Tssr38756	transcription start site region 38756			1657 bp upstream
Tssr38757	transcription start site region 38757			1686 bp upstream