rs50787699 SNP Detail

Summary

• ID
  rs50787699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33077160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACAAAT ATCATGTTTT
  TCATATGTAG AATCCAAGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTAGGAT
  AACAGCAAAA GACTGAATAT TTGGAGTGAG GAAAAGAATC AGTGGAGCTG GGCAGGGTGC
  ATAAGAGAGG CTTTGTGGGG TTGAGTAAGA GAAAAACATA ATGACATCTA TGTGCAAAAT
  R
  TAGTGAAACC TATTGTTTCA TATGCCAATT TAGAAACAAG CTAACCTTCT ATCTTCAGAC
  AAGGACCAAC AAGGACCTGA GGCTGCCATG GCTACTGGAC TAAACTTGGA TGCAGATTAT
  TCTACCAGTG TTAACCTTCA GATGATAATA ACCTCAACTT GACCAGAGCA CTTGACCTGG
  GTTTGTCATC CTTAGAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60876003	NES15978093	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	G		G
ss321780530	CHEV_6_33050225	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50787699					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876003	NES15978093	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33077160 () rs orientation: forward

Symbol	Name	Function Class
Rr628170	regulatory region 628170	789 bp distal