rs50783240 SNP Detail

Summary

• ID
  rs50783240
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102970010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGGAGCTCAG AGGGAAAGGG AAAAGCTTAA GGAAGTTTTG
  TGCAGACTAC TATGTGGAGG GTGTTGGCAA GCAGACGATT CAGCCAGCTA TTCCAATGCA
  G
  AAATGACTGT TAGGTCTGGA GAGCACAGCT ACTTGACGAA GTGAAGTGGC CCTCAATGCT
  TGGCAGTAAA GATGCAGGAC CCATACCGAG GAAGTGCAAG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147138448	ENSMUSSNP3129533	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50783240					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102970010 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14511	CpG island 14511			1084 bp proximal
Dnai4	dynein axonemal intermediate chain 4			Intron
				Noncoding-Transcript-Variant
E030030F06Rik	RIKEN cDNA E030030F06 gene			within coordinates
Mier1	MEIR1 treanscription regulator			1577 bp upstream
Rr596355	regulatory region 596355			within coordinates
Rr596356	regulatory region 596356			1092 bp proximal
Rr596357	regulatory region 596357			1593 bp proximal
Rr596358	regulatory region 596358			1732 bp proximal
Tssr38082	transcription start site region 38082			1572 bp upstream
Tssr38083	transcription start site region 38083			1589 bp upstream
Tssr38084	transcription start site region 38084			1649 bp upstream
Tssr38085	transcription start site region 38085			1899 bp upstream
Tssr38086	transcription start site region 38086			1963 bp upstream
Tssr42583	transcription start site region 42583			1397 bp downstream
Tssr42584	transcription start site region 42584			1409 bp downstream
Tssr42585	transcription start site region 42585			1425 bp downstream
Tssr42586	transcription start site region 42586			1492 bp downstream
Tssr42587	transcription start site region 42587			1503 bp downstream
Tssr42588	transcription start site region 42588			1544 bp downstream
Tssr42589	transcription start site region 42589			1749 bp downstream
Tssr42590	transcription start site region 42590			1999 bp downstream