rs50782150 SNP Detail

Summary

• ID
  rs50782150
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137573233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA AGCGCCTGTA GGACGAATCC
  T
  TGCGGCAATC ACTCCCTAAC GGAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135944566	ENSMUSSNP140760	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320976924	CHEV_3_137530436	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50782150					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137573233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	1644 bp distal
Cpgi13867	CpG island 13867	within coordinates
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	mRNA-UTR
H2az1	H2A.Z variant histone 1	550 bp downstream
Rr398061	regulatory region 398061	1467 bp downstream
Rr586004	regulatory region 586004	1700 bp distal
Rr586005	regulatory region 586005	1102 bp distal
Rr586006	regulatory region 586006	within coordinates
Rr586007	regulatory region 586007	283 bp proximal
Rr586008	regulatory region 586008	1988 bp proximal
Tssr31916	transcription start site region 31916	1601 bp downstream
Tssr31917	transcription start site region 31917	1534 bp downstream
Tssr31918	transcription start site region 31918	286 bp upstream
Tssr31919	transcription start site region 31919	335 bp upstream
Tssr31920	transcription start site region 31920	387 bp upstream
Tssr31921	transcription start site region 31921	406 bp upstream
Tssr31922	transcription start site region 31922	486 bp upstream
Tssr31923	transcription start site region 31923	590 bp upstream
Tssr31924	transcription start site region 31924	605 bp upstream
Tssr31925	transcription start site region 31925	649 bp upstream