rs50781124 SNP Detail

Summary

• ID
  rs50781124
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38539892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA GCCTTGACCT TGGCTATCCT
  T
  CTGCCTCTAC TTCTCAAGTG CTAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134837219	ENSMUSSNP4474974	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320719965	CHEV_3_38384665	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50781124					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38539892 () rs orientation: forward

Symbol	Name	Function Class
Ankrd50	ankyrin repeat domain 50	899 bp upstream
Cpgi13104	CpG island 13104	337 bp distal
Gm65619	predicted gene, 65619	260 bp downstream
Rr397648	regulatory region 397648	693 bp downstream
Rr575675	regulatory region 575675	1497 bp distal
Rr575676	regulatory region 575676	628 bp distal
Rr575677	regulatory region 575677	within coordinates
Tssr28929	transcription start site region 28929	532 bp downstream
Tssr33057	transcription start site region 33057	952 bp upstream
Tssr33058	transcription start site region 33058	921 bp upstream
Tssr33059	transcription start site region 33059	879 bp upstream