rs50779480 SNP Detail

Summary

• ID
  rs50779480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138016376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGCTTGG GGGAAAACCG AGGAGGTGAG GTTACTTGGT
  TATATTAGCT AATATAACAT CATCCCTTCA TTGAGAGGAA ACCTGGTGTT GTAGTTCTTA
  K
  GTCTTAATAA GTTGGAGAAG AAGGTAAGAT TTGGACCCAG GTCTGTTAGC ACTGGCATGG
  CACTCCTAAC TACCTTACTC TCACACCAGA GAGCGGAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135951254	ENSMUSSNP4069920	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320979283	CHEV_3_137973579	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50779480					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138016376 () rs orientation: forward

Symbol	Name	Function Class
Rr586123	regulatory region 586123	596 bp proximal