rs50779400 SNP Detail

Summary

• ID
  rs50779400
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19684543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCAGAC ACTTCCTGAG
  GTCAGCAATC CAGACAGGGA AGTGCAGAGG TTCAGATGTG AAAATCAGGA GGCTGGGTCA
  CAGAGAGGTT AGTCACACAG GAAGTGAGAG CCAGTGGCTT GTGTTGACTC TGTAGGACAT
  TGGACAGGGT GCTCAGCATC TGGGTTATTT CCCTTTCATC TTCCATAAAG CAGGATGGCC
  S
  TGTGGCACTT CCTCTCACTT AAGATAGAAT TTCACTCTCT TAGCAGAGGT CCTGGAACAC
  AGTAAGAATC AATAAGAAGG GGGATGCGGA TGGAGGAAAA GGAAACGGGA GGGGAGGAGA
  GTGAGAGGCA TAAATGCAGC CTGGTATTCT GCTGGCACAC TGCAGAGCCT GGGACAGACT
  TCAGTACCAA GGGGCCTGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376844	NES15884506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50779400					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376844	NES15884506	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19684543 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	1646 bp upstream
Cpgi13003	CpG island 13003	1302 bp distal
Cpgi13004	CpG island 13004	308 bp distal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	1312 bp downstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	1932 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	1509 bp downstream
Rr574008	regulatory region 574008	1713 bp distal
Rr574009	regulatory region 574009	1156 bp distal
Rr574010	regulatory region 574010	within coordinates
Tssr32702	transcription start site region 32702	1694 bp upstream