rs50778913 SNP Detail

Summary

• ID
  rs50778913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121396527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGAGGGT AAGGGTTTGC CTTCTCTGTT TTCCCCTCTG
  TGTGAAGACG CTGCAGCTTC TACTCTGGAA GATTCAGCAA CAAGATGCTA TCTGGAACCC
  Y
  GCAACTGGTT CTTAGTAGAT CTGAACCTAC TAGTGCTTTA CTCTTAGACT TCCCGACTTT
  CAGAACGGTG AAAAATGAAG TTCTGTTGTT AACAAGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135724883	ENSMUSSNP7180543	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320904165	CHEV_3_121305796	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50778913					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121396527 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	1356 bp downstream
Rr584125	regulatory region 584125	277 bp distal