rs50776277 SNP Detail

Summary

• ID
  rs50776277
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20561481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGCAAG TACTTGTCAA
  CAAGCAATAG TGTCTGGGTT TGGTGACAGT ATATGTGATG GATGCCCAGG TGGGGCAGTC
  TCTGGATGGC CTTTCCTTCA GTCTCTGCTC CACACTTTGT CTCTGTATCT CCTCCCATCG
  TTATTTTGTT CCCCCTCTGA AAAGGATCAA AATATCCACA CTTTGGTCTT CCTTCTTGAG
  Y
  TTCATGTGGT CTGTGAATTG TATCTTGGGT AGTCTGAGAT TCTGGGTTAA TATCTACTTA
  TCATTGAGTG CATACCTTAT GTGTTTTTTT GTGATTGGGT TACCTCACTC AGGGTGATAT
  TTTCTAGTTC CATCCATTTT CCTAAGACTT TCATGAAATC ATTGTTTTTA ATAGCTGAGT
  AGTACTCCAT TGTGTAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss134672174	ENSMUSSNP3523322	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
ss320680599	CHEV_3_20406239	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50776277					SNP	T	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20561481 () rs orientation: forward

Symbol	Name	Function Class
Gm31466	predicted gene, 31466	1111 bp upstream
Rr574081	regulatory region 574081	1942 bp proximal
Tssr32748	transcription start site region 32748	1107 bp upstream
Tssr32749	transcription start site region 32749	1092 bp upstream