rs50771394 SNP Detail

Summary

• ID
  rs50771394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90338121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGGCA GTCAGTCATC
  TGGGCAACTA GCAGCCCACG TGGGGCACGG CAGCTTTCAG CCAGCCTTCC TGTGTGCCCA
  TCTATTCCTT ATCACCGCTT CTGTGGGCCC TGTGAAACAA CCTCCCTCCC TTCTTTGAAC
  ACTATTGGAG ACCAGGGTGT ATGTAACTCA GCACCAGAGC ACTTGGCCAG CATGTACACA
  R
  CCTGAGTACA ATGAGAAAGA TCGTTTCCCA TTCTGATGGA CAAACAGGCA TCAAGCACAA
  GGTGATGGGG GAGGGTGGAG GTGTGGGGGG AGGGGGCTTC TTGGGAGATA CATGAAGTGG
  GAAAGACCGA CTCAGAAGCA TAATTATTTG AGAAGCCAGG ATGTAGCTGC TCTGTTCTGC
  TGGTCACATG GCTTTATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60907160	NES15949592	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50771394					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60907160	NES15949592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90338121 () rs orientation: forward

Symbol	Name	Function Class
Rr634185	regulatory region 634185	1414 bp distal
Rr634186	regulatory region 634186	268 bp distal
Uroc1	urocanase domain containing 1	Intron