rs50769338 SNP Detail

Summary

• ID
  rs50769338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121395223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAACAACTT ACAATCTGTT GTGTTGTATA AAAATAAAGA
  AAGAAGGAAT ATGTTTGGTG GGTGTGCAGT CAGGTGTAGG GGAAGGGGTG CCTCTGTGGG
  Y
  CCATGTTGAG GCATCCCTTT CCCGAGGGAC CAGCCACATG ACAAAGGTAT AGTATAGAAT
  AGTTTATTCA GGGCCTGGGG AGGGGAGTTG AGAGGGTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135724847	ENSMUSSNP3441064	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320904159	CHEV_3_121304492	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50769338					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121395223 () rs orientation: forward

Symbol	Name	Function Class
Gm33485	predicted gene, 33485	within coordinates
Gm65954	predicted gene, 65954	52 bp downstream
Rr584124	regulatory region 584124	838 bp distal
Rr584125	regulatory region 584125	247 bp proximal