rs50761997 SNP Detail

Summary

• ID
  rs50761997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141296865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCACAGCC GCTTTTAGTA GCTACCTTTG
  CTCCAAGAGG GCAGTCAAGC TGTATGATCA AGTATTATCA CAAGAAAAAC AGTTTAATCC
  AAATGAAATG TCCTGTTATT ACAAGTAAAC TCTAGACAAG AGGGAAGACT AAGAACAGCA
  Y
  TGGCTCCTGA CACTTGTCTG TGATGAAAAC TTTCCCATCT TGAGAAATCA TTCCTgggct
  gagagatggc tcagtggtta agagtattga ctcttcttct gaaggtcctg agttcaaata
  ccagcatcca catggtggtt cataaccatc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092022	NES16588690	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		T	C		T
ss320993589	CHEV_3_141254068	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50761997					SNP	T	T	T	T	T	C	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092022	NES16588690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141296865 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			1235 bp distal
Tssr32042	transcription start site region 32042			960 bp upstream
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant