rs50756522 SNP Detail

Summary

• ID
  rs50756522
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116242278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA ACAAAAACCC AACCAACCAA
  A
  CAAACAAAAA AGTATGCAAC ACAAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss133575658	ENSMUSSNP32174	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50756522					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116242278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			681 bp distal
Gm44103	predicted gene, 44103			1222 bp upstream
Gm67200	predicted gene, 67200			1264 bp upstream
Rr399855	regulatory region 399855			1011 bp downstream
Rr637176	regulatory region 637176			1275 bp distal
Rr637177	regulatory region 637177			1042 bp distal
Rr637178	regulatory region 637178			505 bp distal
Rr637179	regulatory region 637179			282 bp proximal
Rr637180	regulatory region 637180			728 bp proximal
Rr637181	regulatory region 637181			1890 bp proximal
Tssr58359	transcription start site region 58359			1092 bp downstream
Tssr58360	transcription start site region 58360			1051 bp downstream
Tssr58361	transcription start site region 58361			1035 bp downstream
Tssr62562	transcription start site region 62562			1260 bp upstream
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR