rs50756456 SNP Detail

Summary

• ID
  rs50756456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48173850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACAGCC AGATCCTGAG
  GGCTTAGCAT TCCTATAAGT TCATTCAGTC TCTGTTACAT GTGTATATAT ACCTGACAGA
  ACATTGCCAC TCATGGTTTC AAACATGCTA TAAGTGTAAG AACTCTCTAT GTCTTTCATC
  ACCACCATCA CCACCACCAC CATCATCATC ATCACTTCTC TTACTTTTGC CTTGCTGCTG
  R
  GCCCTCTTTC TTATTCCTTT TCTTTGCTGC AGACTATTCC ACCACAGCAC ACCTGAGGTT
  CCCCCATCTT TTGACCCAAC ACTTAGCAAT ACCCAACTCA TTTCTCGGAA GGGCATGGAC
  TTTCCCCATC TCCATCTATT TCTGGGCCCT AGAAGCAACT GTCCCCTGGG AGACACCTTT
  GTCACTGCCC TGCCCACTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62761316	NES17343717	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	A		G	G	G	G		G
ss325406947	CHEV_17_47999874	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50756456					SNP	A	G	G	G	A	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62761316	NES17343717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48173850 () rs orientation: forward

Symbol	Name	Function Class
Rr392692	regulatory region 392692	within coordinates
Rr528160	regulatory region 528160	178 bp proximal
Rr528161	regulatory region 528161	1760 bp proximal
Tssr145062	transcription start site region 145062	638 bp downstream