rs50755964 SNP Detail

Summary

• ID
  rs50755964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:25645329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCCCAT GGCATCAGGC
  ATGAGCACCA GCAACCCCGG CATCAACTCC CCACAGTTCG CAGGGCAACA GCAACAGTTC
  TCCACCAAAG CTGGCCCTGC ACAGCCCTAT ATCCAGCCCA ACATGTACGG CCGACCTGGC
  TACCCTGGTA GCGGGGGCTT TGGGGCCAGG TGAGTGACCA ACCTGGATGG TGCCCTTCTA
  Y
  GGCAGCGTGT TAGCCCTGCC TTCCTACCTA CATCCAGGAA GGACTCTTAT TTGAATGCCA
  GTTCCACATA GCCTGGTCTA GGATATGAGG ACAGTTCTGC CATGTGTCTT AGCAGATTGG
  CATCAACCTC CCAGGGGTAG AGGGGATACT TCCTCAGTTC CTTCTCAGCC ATGTACCTTT
  ATGCTAAGAC AGTGGGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62159242	NES17182797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50755964					SNP	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62159242	NES17182797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:25645329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr489197	regulatory region 489197			1183 bp proximal
Rr489198	regulatory region 489198			1635 bp proximal
Tssr124634	transcription start site region 124634			152 bp downstream
Zmiz1	zinc finger, MIZ-type containing 1			Intron
				Noncoding-Transcript-Variant