rs50754739 SNP Detail

Summary

• ID
  rs50754739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18513308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAAGATCA ATTCTATATT AGATGAAAAG AACTTGGGGA
  GATTCCAGGT TGCTCAGTGT GGAGAATGTC CAGAGAAGAG CAGAAGTGCT CCGCACTTTC
  Y
  CTCATGCACT GACCTATGTA TCTCTCCCAT CTGGCCATTC ACATATACTT TGTTAAATTA
  TTTATAATAA AATGATGAAT ACAAGTAAAG TGATTCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134658345	ENSMUSSNP5097265	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320675294	CHEV_3_18359144	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50754739					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18513308 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65525	predicted gene, 65525	within coordinates
Rr573905	regulatory region 573905	1203 bp proximal