rs50754013 SNP Detail

Summary

• ID
  rs50754013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135368154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAGCCA TCAGGCCAAG
  GCTACACACA TGCCAGTCAA TAATGAGTCT AAAGGAAGCC CGTGCGCTAT AGCATAAAGG
  GACCTTAAAC AGTTTGTGGG TTCGTTAATT AGCAGTCATG TCAGGAGCAT TAGTTCTGTA
  CGCTTGGTCT GGTCAGAATA TAAAGGTTAC TTTCCTACTG TTTCCCCAGA GCCTCGTGTC
  Y
  TGGCTGACAA GACTGGCCCT CAGATACAGA ACTGAGGGGC TAAGACTGGC TCTCTGTGAG
  CTGCGGTAAA GCAAAAAGGA GCACTAATGG GTAATGAGAT ACGGAGAAGA GGAAAGTCCT
  TACACGGGGT GAAGACAGGG CTTCAGGGTA TTCTAACAGA GACCAGAAAC CACACTTGCT
  AAAACGATGT GTGTGCGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135928165	ENSMUSSNP4006064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50754013					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135368154 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	within coordinates
Tssr35804	transcription start site region 35804	901 bp downstream