rs50753169 SNP Detail

Summary

• ID
  rs50753169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT AAGTGGCGGG CCCATTACTG
  K
  GCTCCTTATA TACTGACATT AGTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136115286	ENSMUSSNP3314670	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss321031898	CHEV_3_153605938	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50753169					SNP	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648611 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	1006 bp proximal
D3Mit88	DNA segment, Chr 3, Massachusetts Institute of Technology 88	1866 bp distal
Rr587801	regulatory region 587801	within coordinates
Rr587802	regulatory region 587802	1648 bp proximal
Tssr32439	transcription start site region 32439	1877 bp upstream
Tssr36252	transcription start site region 36252	1451 bp downstream
Tssr36253	transcription start site region 36253	1487 bp downstream
Tssr36254	transcription start site region 36254	1658 bp downstream