rs50752341 SNP Detail

Summary

• ID
  rs50752341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135749917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT TAATCCCAGC ACTCGGGAGG
  Y
  AGAGGCAGGA GGATTTCTGA GTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353740	CHEV_4_135578521	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50752341					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135749917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	492 bp distal
Eloa	elongin A	957 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	634 bp downstream
Rr602239	regulatory region 602239	854 bp distal
Rr602240	regulatory region 602240	595 bp distal
Rr602241	regulatory region 602241	405 bp distal
Tssr44023	transcription start site region 44023	941 bp upstream
Tssr44024	transcription start site region 44024	912 bp upstream
Tssr44025	transcription start site region 44025	870 bp upstream