rs50749679 SNP Detail

Summary

• ID
  rs50749679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141295317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAAAGG CTTGTCTACC
  TGGAGCTTGA GAAGCCTATT GAGAAAACTC ACCTAGAAAG GAGCTTCATA ATTGTGGCTG
  ATGCAGGGTA ATTAATGTGG ACATGGGGAA AGAGGGGTTT CCATATGAGA AATCCATGTC
  TGGTAATTGG GAAAGGAAGC ATTGCTTTGA GCCCCTAGGT GGTATGAAAA GGCTGCGAGA
  R
  AACATTGTAG AGATTAGGGT CTCAGAGCAT TGTCCCTGAA TGTTATAGTA AGAAGCAGAA
  TGAAATTAAT TCCAGGATGC CCTTGACTTC AGGCTTCCTA ATTAGGAGAG CTAATCACGT
  GGCTTTATAG AATTCAATCA AAGCAGCTTT TGTTCCGGAG AATTCTATTT GCTTTTTAAA
  AGAAGTTCTT TTTGTAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61092034	NES16588678	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G		A	A	G		A
ss136005336	ENSMUSSNP4182423	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A					G
ss320993576	CHEV_3_141252520	CHEVERUD	SCREENING_POP	f	SNP										G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50749679					SNP	A	A	A	A	A	A	A	A	A	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092034	NES16588678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141295317 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586339	regulatory region 586339			within coordinates
Unc5c	unc-5 netrin receptor C			Intron
				Noncoding-Transcript-Variant