rs50748997 SNP Detail

Summary

• ID
  rs50748997
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCACACG TGCACACACG
  AGCATCCACA GGCACATGCA CACATGCTTG TGTGCACATA CCAGGCATGG TGAAGAATAC
  TATAATCCCA ACACTGGGTA GATGGAGACA GCCAGCCTAG CCTTGCGGGT GAATCCTGGG
  TTCCAGTGAG AGACCTTGCA GCAAAACTCA AGGTAGATCT AGGAGGATAC AAGCTGGCAT
  G
  CAACTGAGCC AGCAACTGGC CCCCTCCACA GTTCTTGCTA TGTCTTCATA GCAAATTCCT
  CTGTTAGAGG TAATGCTGTG TGGAATGGTG TCTTAGCTAG GGTTTCGTTG CTATGAAGAG
  ACACCATGAC CAAGGCAACT CTTACAGCCA AGCATATTCA AACCACCACA AATAGCAAAC
  AAGCCTAGCT TCAGGTACCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147553142	ENSMUSSNP629268	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs50748997					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621936 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	769 bp upstream
Rr602181	regulatory region 602181	1476 bp distal
Rr602182	regulatory region 602182	1160 bp distal
Rr602183	regulatory region 602183	366 bp proximal
Rr602184	regulatory region 602184	780 bp proximal
Rr602185	regulatory region 602185	1346 bp proximal
Tssr39650	transcription start site region 39650	555 bp upstream
Tssr39651	transcription start site region 39651	759 bp upstream
Tssr39652	transcription start site region 39652	789 bp upstream