rs50746710 SNP Detail

Summary

• ID
  rs50746710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83809567 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      C TGGCTTGATT CCCCTGGCTT GCTCAGCCTG CTTTCTTATA
  GAACCCAGGA CCACCACTGG CCCAGGGATG GCAGCACCCA CAATGGGCTG GGCCCTCCCT
  Y
  CTTGATCACT AATTGGGAAA ATGCCTTACA GCTGGATCTC ATGGAGGCAT TTCCTCAAGG
  GAGGCTCCTT TGTCTGTGAT AACTCCAGCT TGTGTCAAGT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149029430	ENSMUSSNP2718227	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50746710					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83809567 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi17619	CpG island 17619	607 bp distal
Gm68055	predicted gene, 68055	within coordinates
Paip2b	poly(A) binding protein interacting protein 2B	844 bp upstream
Rr399726	regulatory region 399726	564 bp downstream
Rr632951	regulatory region 632951	1302 bp distal
Rr632952	regulatory region 632952	855 bp distal
Rr632953	regulatory region 632953	1141 bp distal
Rr632954	regulatory region 632954	354 bp distal
Rr632955	regulatory region 632955	813 bp distal
Tssr61712	transcription start site region 61712	883 bp upstream
Tssr61713	transcription start site region 61713	865 bp upstream
Tssr61714	transcription start site region 61714	835 bp upstream