rs50745028 SNP Detail

Summary

• ID
  rs50745028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55552553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACGTAAAT GCTATCTTGT
  TGGGGGTGAG AAAAAGTCAA TACCAGTCCG TTAGATCAAA ATAAAACCTG GATCAAGTGA
  AGAACAGAAT TATCACCGCT TACCCATAAC TGAACCACTT TTTATAGAGT TTCAAAGTTT
  CTTTTAGTTT AATTTTCTAA GTGATTCCAC AAGCTAGGAG AATAAGCATC ATCAAAGACC
  R
  CCTCACAAAT ACTAAAACAA GGGGCAAAGA ATGCCATGGA CCACATGAAC CTAAGTGGTT
  GTAGCTTAGA AGTTAGCAAT TCAGGTGTCT TTACTTAAAA AAAAAAAAAA AAACAAGCTC
  AGCCCATTTT ATAGAAGGTG CTTTTCAGTA TTAATTTCCA TCAACGGTTT CTATGAATCT
  CTTTTACCTT AAATAATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60413531	NES15908270	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50745028					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60413531	NES15908270	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55552553 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576982	regulatory region 576982			591 bp distal