rs50741838 SNP Detail

Summary

• ID
  rs50741838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127741832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCATCT GTCCTCTCTG
  AGATGTAAGA ATGGGAGCTC TCCTTACCGC AGGCCAGTTC TTCCTTTCTA CCTGGCTACA
  CCGGTGCCCT GGCATGCGTC TGCTCTGCTG CCCTCTGCTT TAAGTTTCTG AGTAAAGATT
  TTCAGAAACA AAGGACTCTG CATCAGCCTT ATCCACCAAC CAATGAATCA GGTAAGAAGT
  R
  TTACTTTTCT TACACTTCTC TGATAGAAAG CAAACTTTCC TTTTATCTTA GAGTTAGTAT
  ATATTGATGA TAAAAATAGG TTGAGCCGAG AGTTTTTATC CACACAAATA ATGAACGTTC
  ATTGTGCTTT CCACACGTCC AGCACCTCCT CTTACTGTCC TCTGATCCTG ATATCCTTCC
  TATCTGCAGC ATCTGACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135875921	ENSMUSSNP4785168	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320958541	CHEV_3_127651101	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50741838					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127741832 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	838 bp upstream
Rr584909	regulatory region 584909	251 bp proximal
Rr584910	regulatory region 584910	690 bp proximal
Rr584911	regulatory region 584911	917 bp proximal